Sunday, September 15, 2013

Ancestry: Autosomnal versus MtDNA

DNA doesn't stop with the percentages you find in tests. Often it takes a further investigation into the history of the populations you represent. I have already found a state of questionablity regarding my amount of Middle eastern DNA. In hopes of diving into my alleles and chromosome results representing my aborigional american DNA I also came across the issue of similarity between Appalachian tribes and middle eastern sample groups specifically Berbers. Of special consideration was the Cherokee contribution on my father's side which is intermixed with Muskogee-Creek. The Creeks are known to carry Mayan DNA while the Cherokee often carry, at least autosomnally, markers that are indistinguishable from middle eastern composition to most calculators. The same can be said of other central Appalachian groups while north and south populations are either Beringian or Mesoamerican of some variety, respectively. Therefore for lack of genealogical evidence it is possible that a result as such is perhaps a false positive. 

That brings me to another interesting point regarding researching population groups. My high percentage groups contain the prefix paleolithic. It is important not to overlook this point because it places the history of those people much farther back in the human migration process (it can also indicate a period of isolation). The inclusion of the term beringian also points to a Asiatic admixture of the paleo-eskimo groups spanning from Russian Siberia through Greenland into Canada and Alaska. There is no consideration for any non Inuit first nations group in my results so far. Given my most recent addition of Indian blood I am wondering if perhaps that means the mother of my great grandma Catherine was also a Mi'maq woman along with a more removed grandmother from Nova Scotia. 
I have a favorite photo taken of myself after my parents divorce with a black and white camera. At the time I noticed that I appeared very Asiatic if not Eskimo due to the mongoloid feature of my eyes and wide face, these features are most notable in the mornings. 

A next step I would like to take is ordering a mtdna test, most likely from familytreeDNA for price points sake. It's another consideration I have made regarding Ancestry.com's poor assessment of my little genetic rainbow that perhaps the exclusion of know admixture as "noise" is not the only way they pigeonhole people. While I have a beautiful plethora of source populations I also have very distinct Y-DNA and mtDNA strains from European origin. My father's y-dna is I1a, now called I-M253, which comes from Fennoscandia especially Denmark. This prehistoric movement of  Danish Vikings was apart of the early population of Anglo-Saxon regions in Great Britain. This haplogroup also asserts the fact that according to myth our branch of the Grant clan is a relation of Haakon Siggurdsson and his brood. Haakon's lineage is just one of the possible origins to the Grant clan. 

Maternal dna would be a new chapter into who and what I am. The genealogical record unfortunately stops short with Elizabeth Paterson my 8th maternal grandmother in Kirkgunzeon, Scotland. I would assume given her location and the families association with Ireland that my maternal line may be Pict. This could also be gross generalization based on birth location. Elizabeth is a 18th century woman giving plenty of time for known mass migrations including the historical banishments of eastern Jews who migrated west in 1300, 1400, 1600 and 1700 AD. Autsomnally and from rare alleles it is predicted that I have a middle eastern haplogroup though as I said above error is possible. I am hoping for a surprise but I would be happy with any result. Further research is always warranted.

Monday, September 9, 2013

Unzipping My Raw DNA, Part Two

I don't believe that most people are prepared to make the jump in amateur genealogy to that of the intermediate especially with the inclusion of genetics. When the veil is lifted and you see who you are deep in your cells and atoms it can be either encouraging or feel as though all your work has been through colored glasses. Genetic testing is probably a positive for those whose ancestors were static and the acculturated generations match those that actually make up your being. I'm having the rather mirror-house experience where the recent does not match not only who I am as a person, but also is a falsification or at best over-simplification of the real genetic source.

The time it's taken to run the simulators and compile them into a single excel document however has given me enough pause to collect most of my thoughts. I have to remember that the exotic is mostly deep ancestry so it would not be relevant necessarily except for some quirks. Yet the mirror house experience is that, everything is exotic, at least in comparison to the records and beliefs of those still living today. Working first with admixtures there is a varying degree of interpretation still to the amount of 'white' that I am. Ancestry's estimate was 52% British isles/34% Scandinavian, on the whole roughly 80-90% carbon white.

Harrapaworld, Asia map, disputes this number with only a maximum of 48.5% European. 'Africa 9' on Dodecad echo's a similar opinion that I am 67.5% or less European (including Indo-European as strictly white). Dodecad World version 3 places this number closer to 52% with the rest highly africanized Iberian or west/southwest asian. Eurogenes perhaps gave the most honest admixture result due to it's definitive sub sects. North Sea, which includes water bound parts of Scandinavia as well as the British isles rests at only 20%. JTest states that of these European groups only 25.4% is wholly white and inadmissible as Jewish. I am only 3% however above the noise level (2.5%) for Azkenazi Jewish heritage so the direct line there is remote. Yet the large chucks of central and eastern European do echo the ancestry given my fathers genetic test.

Southern heritage is much more pronounced than Ancestry claimed with some rare alleles coming from Cyprus, Lithuania, and East Asia. Spain and Northern Italy are the founders of my southern heritage with only one so far found in the genealogical record. Dodecad World 9, for example places me at 72.5% Atlantic_Baltic, 25.5% Caucusus/Southern European and around 1.5% Amerindian. 1.5 is interpreted over and over as either Asiatic or Amerindian, notably however it is inferred as Mexican/Central American Indian when addressed. It also increases as high as 3-8% given the presence of oceanic, papuan, beringian and east asian derivatives. If this was a test I don't believe that 20-53% is ever a passing grade so why would I ignore the beautiful multicultural heritage I have.

So what about the estimations given by Ancestry.com? Well I think I figured that out partially inspired by a comment by the authors of GEDMatch's algorithms. "It not just the presence of a unique factor but also the presence of that percentage compared to like individuals." Thus unique factors on chromosomes could be viewed as noise and with strict interpretation ignored completely as genetic drift for known populaces. With the wars over centuries of the Germanic tribes then it would be easy to assume a known factor level of 'noise' and thus exclude it altogether. I believe this is how Ancestry.com applies their ethnicity predictor so it is most simplified and accurate for Europeans, no doubt their largest consumer at whole.

So what am I? Very roughly estimated in admixture...

  • 26-40% Southern European (Spanish, Italian, Iberian, Sardinian) 
  • 18-24% British Isles/North Seas (Great Britain, France, Scandinavia) 
  • 12-26% Middle Eastern (Persian, Near East, West Asia)
  • 8-10% Eastern European (West Germany, Balkan, Slav)
  • 3-8% Asian/Amerindian (Mezoamerican, Beringian; East-South Asia, Oceania)
  • 3-5% North African (Mozabite, Morroccan, Byaka)


Wednesday, September 4, 2013

Unzipping My Raw DNA, Part One

It's no secret that I was wholly unimpressed with the ethnicity finder on Ancestry.com and it's lack of features. So now that the voices of the many have been heard and my raw data is available I've tried to resist the urge to spread it around like jam on the internet. My first stop was GEDMatch who unfortunately are having server issues because of so many new Ancestry submissions. Moving on then I headed over to Interprenome that is headed by Stanford university science department staff/students.

This new emulator took me from too little data to quite substantially too much!

One of the questions that came about for me was the only unique factor on my AncestryDNA page was a small portion of unspecific southern european. I have been racking my brain and looking for any cooralation in my records that could account for that. The only match I made was to the obscure Italian women who married into the FitzAlan royalty quite far back in my tree's centuries. I am of the opinion that I also need a more specific study journal of my findings since I recall while working inside the Aleramici family in my tree I also came across some women of Spain. The non-specificity even lead too some uncomfortable considerations of probable NPE's and adoption excuses. Interprenome has provided me a unexpected answer in the pan-euro scale. I am quite well into Spanish distribution.

The issue remained of my Cryptozoic-Jewish history supposedly among the women of my father's father ancestry. So using the Asia logarithm I found myself well placed among the Pathan, Sindhi, and Hazara. My closest east/central asian is the Miao Zu people of southern china. To be honest I had no expectations of the Asia group so to find myself clearly defined as a Persian descendant I abesolutley had to know whether I placed on the Pan-Judica map.

Yet another surprise lay for me. I do not place close enough for an exact kinship among the Jewish sample studies. My personal opinion on this is then that I don't have actual Jewish ancestry except to such a minor degree. My Persian history however is echo'ed twice over by my closest match being Iranian and Turkish.

The accuracy of this information of course isn't proven until I run the raw data through GEDMatch. I am hoping to learn my MTDNA haplogroup which according to Interprenome is probably (N1 derivative), but that is just a random guess with very little knowledge behind it.

I look forward to my GEDMatch being finished...hopefully sooner than 4-6 weeks... in order to review these findings and demolish any errors or misgivings I have.